Browser Select Tracks Snapshots Custom Tracks Preferences

 Search

 Search

Landmark or Region:

Download Sequence File Download Track Data Find BLAT Alignment

Data Source Peanutbase - Arachis cardenasii K10017 1.0 Peanutbase - Arachis diogoi INTA10602 1.0 Peanutbase - Arachis duranensis K30065 1.0 Peanutbase - Arachis duranensis V14167 1.0 Peanutbase - Arachis duranensis V14167 2.0 Peanutbase - Arachis hypogaea Tifrunner 1.0 Peanutbase - Arachis hypogaea Tifrunner 2.0 Peanutbase - Arachis ipaensis K30076 1.0 Peanutbase - Arachis ipaensis K30076 2.0 Peanutbase - Arachis stenosperma V10309 1.0

Scroll/Zoom:     Show 2 Mbp Show 1 Mbp Show 500 kbp Show 200 kbp Show 100 kbp Show 50 kbp Show 20 kbp Show 10 kbp Show 5 kbp Show 2 kbp Show 1 kbp Show 879 bp Show 200 bp Show 100 bp     Flip

 Overview

 Overview

 

 Region

 Region

 

 Details

 Details

 

  Gene models-Aradu.V14167.a1.M1  

  assembly supercontigs  

  Phaseolus vulgaris gene models  

  Markers: Pandey2017_58k_Affy  

  Markers: ShirasawaHirakawa2012  

  synteny (with Arachis ipaensis)  

  synteny (with Glycine max 2.0)  

  Markers: Shirasawa2013_TA  

  Arachis hypogaea transcript density (Showing 22 of 22 subtracks)  

Clear highlighting

<< Back to Browser Show Active Tracks Only Show Favorites Only Clear All Favorites

 Tracks

 Tracks

 

 General

 General

 All on All off 

assembly supercontigs

DNA/GC Content [?]

 Genes

 Genes

 All on All off 

Glycine max 2.0 gene models [?]	Gene models-Aradu.V14167.a1.G1 [?]	NCBI Arachis duranensis annotation [?]
Phaseolus vulgaris gene models [?]	Gene models-Aradu.V14167.a1.M1 [?]

 Genome structure

 Genome structure

 All on All off 

synteny (with Arachis ipaensis) [?]	synteny (with Medicago truncatula 4.0) [?]	synteny (with Vigna radiada) [?]
synteny (with Glycine max 2.0) [?]	synteny (with Phaseolus vulgaris 1.0) [?]
synteny (with Lupinus angustifolius 1.0) [?]	synteny (with Phaseolus vulgaris 2.0) [?]

 Markers

 Markers

 All on All off 

Markers: Bertioli2014_AF2 [?]	Markers: Clevenger2018_48k_Affy [?]	Markers: Shirasawa2013_AA [?]
Markers: Bertioli2014_AF5 [?]	Markers: NagyGuo2012 [?]	Markers: Shirasawa2013_TA [?]
Markers: Bertioli2014_TF6_TA [?]	Markers: Pandey2017_58k_Affy [?]	Markers: ShirasawaHirakawa2012 [?]

 RNA-Seq 

 RNA-Seq 

 Illumina 

 Illumina 

 Response to Drought

 Response to Drought

 All on All off 

A. duranensis X drought transcript density [?] [showing 2/2 subtracks]

A. stenosperma X drought transcript density [?] [showing 2/2 subtracks]

 Response to Nematode

 Response to Nematode

 All on All off 

A. duranensis X M. arenaria transcript density [?] [showing 4/4 subtracks]

A. stenosperma X M. arenaria transcript density [?] [showing 4/4 subtracks]

 Expression atlas

 Expression atlas

 All on All off 

transcript density [?] [showing 22/22 subtracks]

 Transcripts

 Transcripts

 All on All off 

Arachis duranensis [Ozias-Akins et al.] [?]	Arachis hypogaea [Guo et al.] [?]
Arachis hypogaea Tifrunner transcripts sSQ6 [?]	Arachis hypogaea [Zhang et al.] [?]

Snapshots

Snapshot Name

Snapshot Timestamp [GMT]

Custom Tracks

[Help with uploading custom tracks]

There are no tracks yet.

Add custom tracks : [From text] [From a URL] [From a file]

Show grid	Image Width 450 640 800 1024	Highlight feature(s) (feature1 feature2...) Clear highlighting
Cache tracks		Highlight regions (region1:start..end region2:start..end) Clear highlighting
Show tooltips		Region Size (bp) 200000 20000 10000 5000 1000

The Generic Genome Browser. For questions about the data at this site, please contact its webmaster. For support of the browser software only, send email to gmod-gbrowse@lists.sourceforge.net or visit the GMOD Project web pages.